Coax Kid,
First, let me say that I'm not a 'fan' of 'co-phasing' antennas. I've found that they seldom perform as expected/desired, and most 'co-phased' harnesses are not close to being what they should be.
To answer your question, it probably won't make any practical difference if you just put new connectors on the coax. If the resulting SWR is close to 1.5:1, it's really about as good as it'll get without a lot of work.
A 'phasing-line' has to be a particular length because it manipulates the signal so that it gets to the two antennas at the same time, or in the correct electrical 'phase'. There are formulas that can be used to get you very close to that correct phasing. The problem is that all coax isn't of the same impedance, and have the same 'delay' as advertised. That's because of variations in how the stuff is manufactured, the next 50 feet may not be exactly the same as the last 50 feet of cable. which a normal thing when making ~any~ cable. That means that to really get close, it has to be measured electrically in each instance. The equipment to do that with would probably cost more than your whole radio system, and while certainly nice to have, just isn't very practical for everyone. The best you can expect is something about 10% plus or minus what you expect, sort of.
So, the 'quick-n-dirty' way to do it is to just add the connectors and see what you end up with. If it's acceptable, but not great, you have two choices. Take what you got, or throw more money at it. (Hope you have lots of 'ammunition' for that 'throwing' part.)
Sort of like trying to get rid of a particularly irritating 'squeak' noise. You might, after a lot of work, but you'll get it back shortly, you know?
Hope it works for you!
- 'Doc