Yes, it makes a difference.
The PDX was Ed Dulaney's response to the FCC's tightened linear rules of 1979. The ham-band switch he built into the gray-case models would no longer get him around the new rules. You'll notice a crystal socket on the front panel. There's a jack for a morse-code key. Should say "20-meter CW transmitter" on the front, as well.
Later ones did, anyway.
The four-tube driver stage of the previous Phantom model became a 3-tube driver, with one empty socket hole. A socket for a baldy tube was punched off to the side of the drivers. This was wired as a crystal oscillator, connected to that crystal socket and morse-code key jack on the front panel.
Later versions of the PDX had a different punch pattern in the chassis deck, with only three holes for the driver sockets.
Instructions to hook up a keying circuit, and bypass the crystal oscillator would arrive in the mail a day or two after your "CW transmitter". We converted more than a few of these back into linears at the time. The sideband switch would go in the hole where the key jack had been.
The baldy tube is needed to balance the 12.6-Volt heater supply. D&A wired pairs of 6.3-Volt tube heaters in series. Can't do that with an odd number of tubes. Pull out the baldy and the heater in one of the three driver tubes goes dark.
We tried eliminating the baldy tube by using a resistor in its place. Never would work. Either the third driver tube would run hotter than the other two, or the other two would run too hot. Could never make the three of them balance without the baldy's heater in the circuit.
The Maverick got the same treatment and became the "MDX" model in a brown cabinet.
It appears the name got changed after he worked out the design changes. Don't think too many of these were sold with the Phantom name on them.
RIP Ed Dulaney. Gotta give him credit for trying.
73