Just off hand, if things have gotten worse after installing a lightning arrestor, then I would have to think that something wasn't done correctly. If that lightning arrestor was designed correctly, and if it was installed correctly,there's really no reason why it should make that kind of difference. Neither should grounding a mast, or tower, or other support structure.
I think I'd stand back and take a good look at what's there, see if there's any obvious thingys that really don't seem right for some reason. If you haven't before, it's probably a good time to RTFM (read the furnished manuals, and yeah, I know, I always read the manuals...sooner or later, sort of).
The easy part is knowing that there's a mistake somewhere. The hard part is finding that mistake. Fixing that mistake can go in either direction, easy/difficult. The really, really difficult part (at least for me) is figuring out who'da done such a thing, cuz I wouldn't have done that!
Good luck.
- 'Doc