Being top loaded, and using a 2nd grounded antenna, maybe the spacing between the 2 antennas is what's causing it. Maybe it's the heigth. Try adding a spacer (spring) to the skipshooter, and see how it affects your swr, and go from there.
The antenna was tested on the analyzer without the grounded antenna in place and then compared to two others; what I'm trying to determine right now is why the ohms are so different on this stick compared to the others (plus I'm just trying to understand the swr/ohm relationship overall)... I did think about the height issue though and want to play with the height of the rear antenna and see how it affects the gain and swr's...