That so called "perfect" SWR really doesn't tell you much. The only reason people ever used it to tune antennas is the price that said meters were available for. The SWR reading you get has little to nothing to do with performance, and it is possible to have a low SWR for the wrong reasons. A dummy load is an example of this, near if not "perfect" SWR, but almost nothing gets radiated.
What you want to look for, as mentioned above, is X. You want it to be as low as possible. There is a problem with this, however. X, along with R, will typically change as you move up the coax, so unless you are plugged directly into the antenna, which is impossible in your setup assuming you are using a Wilson 5000 magnet mount (if I am mistaken about this, please say so). What you need is to tune is X (and possibly R) at the antenna, not the X that you get at the end of some length of coax. The next best option is to use an electrical half wavelength of coax, and that will be good for exactly one frequency. Other nearby frequencies will at least be close, but the further you get away from the one frequency the more off the device will be. Unfortunately, I'm not sure as to the electrical length of the feed line that comes with that antenna, and that is assuming they all have a consistent electrical length...
My recommendation would be to, if you haven't done it already, bolt the antenna to the vehicle, and use a mount that has a PL-259 built in. When tuning the antenna analyzer use a male to male coupler if possible, and if not use as short a length of coax as possible, definitely try and keep it under a foot, if not 6 inches. Distance from the feed point matters, and the further away you are form the feed point you are the more off the readings will be. With a magnet mount you have no control over the length of coax unless you have taken the magnet mount apart and installed a new coax. You might get lucky, but I wouldn't count on it.
And if you cannot get direct access to plug the antenna analyzer directly into the antenna's feed point, and you don't have a coax of known (and desirable) electrical length, that brings us back to SWR. Unlike X and R, SWR doesn't change over the length of coax, and if it does it is a sign that you have a problem. Unfortunately that makes it the only stable means of tuning, which for many antennas makes these devices little more than expensive SWR meters.
I know, that isn't what people want to hear/read, especially after dropping a lot of money on such a device, but it is part of the learning curve to learn how to use them properly. If you just use them and hope for the best, you might well get lucky, but you might also make your antenna perform worse than just using an SWR meter in the first place.
Antenna analyzers aren't as simple of a device as SWR meters, and they can give you a lot of information. If you really want to take advantage of the tuning abilities these devices give you, you need to understand the various things they are telling you, as well as their limitations.
There are many people here that are happy to help, so don't be afraid to ask questions...
The DB