OK, I would reference the document attached as a guide only.
Regarding the clarifier not functioning on AM/FM mode - you need to align the radio in SSB mode. Inject a 1KHz tone into microphone and if you are in LSB mode, you will see a TX frequency -1KHz lower than the VFO frequency. If you are in USB mode, you will see a TX frequency +1KHz higher than the VFO frequency. (I think this is what you are asking about?)
First, center your clarifier, then I would make sure the reference, etc is correct.
Then you will need to work out which of the cans T17 - T22 are for which particular 1KHz step, and adjust them one at a time, accordingly.
For example,
27.380 might be T17
27.381 might be T18
27.382 might be T19...
etc.
Also, don't assume that they will go up in sequential order. They might be random cans for each 1KHz step value.
When 1,2,3,4,5 KHz steps are done, then steps 6,7,8,9,0 should fall in line.
Good luck!