There are so many variables when it comes to complex impedance matching multiple components from driver to amp to coax to antennas, that all the basic SWR meter is good for is initial setup to identify if your install is safe to use for a certain amount of time. You know your system and when meters such as a basic SWR bridge shows something out of the ordinary then it prompts the operator to check their system especially when no change has been made. As far as amps putting out harmonics or running unstably, picket fencing, etc. the solution is to run them within their clean operating (linear) specs. This may mean that you have to spend a lot more money to achieve the intended power level if you want to maintain clean signal. The cost of one component is never the total cost, as all components in a radio system must keep up with the highest specified component in order for the system to be stable, especially at higher operating levels. To understand the math is one thing, but to be able to use the right equipment to analyse your output is a whole other challenge in terms of cost. A Spec An will tell a lot about your signal and in all honesty, any amp that is overdriven will not look good spectrum-wise, especially when you modulate. Hope this helps.